Each gene expression level was normalized to Hprt levels and presented as relative to WT.
Each gene expression was normalized with GAPDH mRNA content and the ΔΔCt method was used for all real-time PCR analyses.
Notice that each gene expression is bounded in a range interval defined by the minimum and maximum value of all its conditions obtained from the 1436 hybridization experiments collected in the TAIR website (www.arabidopsis.org).org
For each gene expression experiment in K562 cells, three technical repeats (same experiment) and three independents experimental repeats were performed.
A semiparametric approach, using dependence functions known as copulas, is considered to quantify and estimate the pairwise association between the outcome and each gene expression.
All four methods associate with each gene expression profile a number μ(f).
For each gene expression profile we generate two series of min(n!,100) random permutations.
The effect of REX1 knockdown on these transcription factors was different in each gene expression.
Thus each gene expression profile Yi(t) hashed to unique identified, Hi, and each such identifier corresponds to a cluster.
RS9 qRT-PCR results were used to normalize each gene expression levels in NDF or DF conditions.
The median absolute deviation (MAD) is calculated and scaled to 1 by dividing each gene expression value by its MAD.
