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The Shimodaira-Hasegawa test (implemented in PAUP* with 1000 replicates) was then used to compare the resultant log likelihood scores of each constrained tree to the original tree.

The differences in likelihood value between the optimal tree and each constrained tree were calculated and the significance evaluated using the Shimodaira-Hasegawa test [54] thus quantifying the difference in phylogenetic signal between different loci along the expression site.

Thus mRNA and protein synthesis are each constrained to have maximum values of 1.0 s-1.

In Figure 8, we plot the absorption wavelength having the highest oscillator strength (among the 10 lowest excitations) for each constrained geometry.

The per-site log likelihood scores were calculated for the best-scoring ML trees under each constrained topology using the -f g option in RAxML.

Each constrained tree was based on an initial guide tree with a single internal branch, generated in MacClade version 4.08 [ 56] or in Mesquite version 2.75 [ 57] (Additional file 6).

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The evaluation was carried out as a series of user-experiments, in which participants were tasked with extracting 100 objects from a common dataset: 25 with each algorithm, constrained within a time limit of 2 min for each object.

Twenty replicate searches were done for each analysis (constrained and unconstrained) and the tree with the highest log-likelihood from each was used for topology testing (below).

If there are users in the system having channel coherence length of and each is constrained to an average power per channel use, the total UL energy available in each coherence block is.

In this analysis, we estimated the position (yellow circle) of the centroid of the grouped transponders (green circles) for each epoch, constrained by the positional relationship of the grouped transponders (red diamonds) in all epochs.

The limited amount of material from each sample constrained the amount of replicas to two per sample and primer set.

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