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Genes that have undergone positive selection can provide very useful pointers to the adaptation process during recent evolution.
Furthermore, a considerable fraction of CGIs has undergone CpG loss during recent evolution, suggesting that they are constitutively methylated and are not bona fide CGIs (25).
Indeed, a recent population genomic study comparing four genetically distinct A. mellifera populations found Ors to be enriched among genes under positive selection during recent evolution of honeybees (Harpur et al. 2014).
The evidence that P. carbinolicus expresses CRISPR spacer #1, and that spacer #1 inhibits growth of a G. sulfurreducens strain that is dependent on hisS of P. carbinolicus, led to the question of whether any effect of this interference during recent evolution could be discerned in the genome of P. carbinolicus.
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This analysis also revealed that several amino acid mutations arose during the recent evolution of the modern subclade 1E in Brazil and Venezuela, mainly (91%) within non-structural proteins (Supplementary Table S3).
However, in the past decade, the B/F ratio has decreased during the recent evolution of supercomputers.
From this comparative map we estimate the extent of chromosomal rearrangement during the recent evolution of these species.
This suggests that gene losses occurred during the recent evolution of A. thaliana, assuming that its small genome is a derived state.
Fitting with this hypothesis, we observed one indel per 5-10 SNPs during the recent evolution of ST7 strains where purifying selection is probably not effective.
and -.011 were represented by S. Montevideo isolates from different subgroups in the tree suggesting that these patterns emerged independently in distinct places during the recent evolution of these isolates.
Data herein indicate that albumin, an extremely abundant housekeeping protein, was the target of pervasive and episodic selection in mammals, whereas GC represented a selection target during the recent evolution of human populations.
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