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The gene number on each chromosome varied from one to six, with one gene on chromosomes 3, 5, 8, 14, 19 and 20 each, two genes on chromosome 13, 15, 17 and 18 each, three genes on chromosome 7, and 6 genes on chromosome 9. Duplication analysis identified 9 pairs of duplicates, which shared more than 90%% nucleotide sequence identity each and were located in duplicated blocks on 9 chromosomes.
Segmental duplication analysis identified four OsBgals located on the duplicated segmental regions in rice chromosomes.
Microbial tests such as fecal coliforms (FC) and parasite egg (Ascaris) were carried out during start, processing and curing time with duplication analysis in 56 days.
Additional expansion of full-length cDNA sets from both blue catfish and channel catfish in the future should allow validation and extension of this approach to gene duplication analysis.
Chromosome 11 12 duplication analysis was performed using the predicted gene models.
Additional file 4: Segmental duplication analysis for SlbHLH genes in whole tomato genome.
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Our co-duplication analysis found higher than expected numbers of co-duplicating genes, yet genes in known genetic modules were not always found to be gained and lost together.
While new gene pairings were suggested by our co-duplication analysis, some pairings predicted by functional modules were not found.
Orthogroups included in the Aboretum run for analysis 1. Shown are the genes used for Arboretum run excluding orthogroups with duplications (Analysis 1).
To identify the ancestral (i.e., pre-inversion) state of each RRMI locus, we combined three methods: target-site duplication (TSD) analysis, BLAT search, and PCR assay.
This observation is also supported by the duplication history analysis of the flanking gene families.
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