The duplicated visual maps are functional as single visual stimuli trigger the activation of two distinct areas in the SC (Triplett et al. 2009).
For the detection of large segmental duplications, we refer to the duplicated blocks map generated by Xiong et al. [ 66].
For the detection of large segmental duplications, we used the redundancy viewer at the MATDB [ 96], the duplicated blocks map provided by TIGR [ 74], the interactive supplementary material by Simillion et al. [ 48], and the interactive maps of duplicated blocks in Arabidopsis by Blanc et al. [ 45].
The ribose-phosphate backbones of the two proposed duplicated segments map onto each other extremely closely.
We estimated the proportion of heterozygous progeny in each gynogenetic diploid family at every non-duplicated marker mapped on the haploid map and polymorphic in the gynogenetic diploid crosses.
(a) Relative percentage of human DNA in all paired calculus and dentin samples calculated from de-duplicated reads mapped to the hg19 human reference genome using BWA.
A comparison of four commercially available MBD-based enrichment kits [ 32] found that the MBD2 protein based MethylMiner™ Kit (Invitrogen) gives the highest DNA yield, as well as the most "non-duplicated uniquely mapped fragments" [ 32– 32].
Second, some male linkage groups only represented a portion of those in females; for example, in three metacentric chromosomes (Co07, Co09, Co13) only one arm and a region containing the centromere were mapped, the duplicated markers were not mapped in males.
Here we illustrate a affordable approach to determine the CNV genotype using matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) and based on the quantitative determination of single nucleotide duplicated mismatches (SNDM) mapping the CNV region and a paralogue genomic region that is used as a two-copy reference.
Duplicated loci were mapped following the work of Waples et al. (2015).
In two chickens, the most likely location of the duplicated block was mapped between markers STS_6 and STS_13 (Table 2).
