A unique patient identifier based on post code of residence, date of birth and sex was created to de-duplicate the dataset.
Because the inpatient cases are found in both datasets, we de-duplicated the merged dataset using probabilistic matching on eight variables (date of admission, date of discharge, date of birth, sex, age, residential ZIP code, diagnosis codes and facility code).
dup then duplicates the current dataset and adds it to the stack.
As multi-allelic markers would appear to be duplicated in the dataset, the script will preserve incompatible duplicates.
In the subsequent analysis with the larger data set, a joint analysis of male and female mapping parents in the half-sib model was performed by duplicating the dataset prior to analysis, with the designation of parents as sire or dams inverted in the duplicate.
For WGD, we duplicated the entire gene dataset, deleted genes in blocks or individually, and rearranged the resulting segments.
As another means of quality control, we adjusted the data using the duplicate reads removal tool of the CLC Genomics Workbench because duplicate reads within the dataset may affect de novo assembly results and misrepresent the real reference contigs generated through assembly.
We found many non- Vomeronasal1s and duplicates within the datasets from Young et. al. [ 9].
Software-related issues such as duplicate data entry were monitored regularly and duplicates removed from the dataset.
For the duplicated dataset D 2 × p h o P, we calculated the conditional link probabilities for SCO4230 and SCO0000 from the MCMC samples, i.e. the probability of SCO4230 being on while SCO0000 is off, and vice versa.
In order to integrate the duplicated synteny anchors in the dataset, we first looked for the bounds of the duplicated part, then we reintroduced all deleted synteny anchors yielding two juxtaposed identical parts, and finally collapsed the synteny anchors involved in the two parts by re-numbering them to obtain the part before tandem duplication.
