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A larger copy number of those miRNA genes that are conserved across species would be in agreement with previous studies indicating that about 50% of the Salmo salar genome consists of duplicate sequence originating from the salmonid specific genome duplication [ 21].
Of the other contigs represented in the HSP70 alignment (Figure S1), contig 20245 (and 20197, which is not shown in the alignment as it is an exact duplicate sequence of 20245) is clearly different to those described above, although this is not possible in comparisons with 06573 as there is no overlapping sequence.
Detailed sequence comparison between human genomic sequence assemblies revealed underlying large duplicate sequence blocks.
The aligned sequence files were reformatted using SAMtools and duplicate sequence reads were removed using Picard.
However, this is highly impractical under moderate sequence length due to the small chance of duplicate sequence sets.
Of these 73,320 soybean transcriptome sequences, 7,810 sequences were subtracted for being either a scaffold or duplicate sequence.
Similar(44)
Such highly similar transcripts may represent duplicate sequences originating from the salmonid specific genome duplication.
Sequence duplication, reported as a percent, is the number of duplicate sequences relative to unique.
Duplicate sequencing batch tests were performed.
We use this profile to search species that contain ambiguous or duplicate sequences.
We have used several assays to study HR between duplicate sequences on non-homologous chromosomes in budding yeast.
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