JPH designed the database wrote the pipeline and helped draft the manuscript.
GL conceived of the study, designed the bioinformatics pipeline and the web pages, and helped to draft the manuscript.
We here also carried out the annotation of the genome draft using the pipeline developed by BGI (Li, Fan, et al. 2010).
YL designed the study, collected data, carried out the analysis and drafted the manuscript; SM programmed the pipeline; TF, XZ and RCE helped on the statistical testing; MK collected and managed data, and help on the study design; MRC conceived of the study and participated in its design and coordination.
QL and EJS developed the Exome-assistant web server and analysis pipeline, and drafted the manuscript.
RET cultured the algae, carried out the wet bench work, built the EST analysis pipeline and drafted the manuscript.
BLAST – Basic Local Alignment Search Tool BLAT – Blast like alignment tool EST – Expressed sequence tag HDQ – High quality base discrepancy MB – Megabase SAGE – Serial analysis of gene expression SNP – Single nucleotide polymorphism MB carried out primary analysis, wrote the software pipeline, and drafted the majority of the manuscript.
MW carried out the comparative genome analysis with SimiTri and BSR, implemented the PartiGene pipeline analysis and drafted the manuscript.
HB: microRNA sequencing library preparation, qPCR, data analysis with Limma and Globaltest, designed E-miR analysis pipeline, data interpretation and drafted the manuscript.
BTL participated in library preparation, development of bioinformatics pipelines, data analysis and drafting the manuscript.
