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Calculations were done as implemented in the SITES software [ 45].
GSEA analysis was done as implemented in the phenoTest package of Bioconductor.
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The SSU rRNA unaligned sequences were spliced into 12 blocks using conserved regions as a reference and, along with the LSU fragment, analyzed under direct optimization (DO) as implemented in the POY 4.0 program.
What they have done as soon as the deal was implemented is to employ an individual with a reputation for being a 'union blaster'.
Dickerson and colleagues found that, in mildly impaired aged individuals who did not meet strict MCI criteria as implemented in clinical trials, the degree of cognitive impairment in daily life and performance on neuropsychological testing impacted the likelihood of an AD diagnosis within 5 years [ 32].
Classification was done using Support Vector Machine classifiers as implemented in the WEKA machine learning package [ 27].
All registration steps were done using trilinear interpolation as implemented in FLIRT (Jenkinson and Smith 2001; FSL 4.1.4).
For multiple sequence alignment of the Ground and Ground-like domains MAFFT was used [see Additional file 3]; in case of GRD-1, GRD-2, and GRD-11 the four domains were extracted by hand and added to the alignment labeled with R1 to R4. Phylogenetic analysis of the alignment was done using Neighbor joining as implemented in ClustalX [ 36].
However, this program, as implemented, does not accomplish the intended goal.
Finally, our IPW, as implemented, do not include lead measurements on nonparticipants and, therefore, assume that all effects of lead exposure on participation occur through measureable health effects or other conditions available in our data.
Current implementations of the binary (Bernoulli model) version of the scan statistic allow adjustment for categorical covariates only, and the M-statistic as implemented does not adjust for covariates at all (although allowing for categorical covariates via stratification would seem to be a straightforward extension of the existing method).
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CEO of Professional Science Editing for Scientists @ prosciediting.com