Sentence examples for domains databases from inspiring English sources

We have investigated the potential functions of these 57 proteins using annotations in databases, motifs and domains databases (Table  3).

First, we submitted the TRIM amino acid sequences to the SMART tool [ 68] where we analyzed the sequence against contemporary the SMART and Pfam [ 69] domains databases.

The tool rpsblast [ 94] was used to search for conserved protein domains in the Pfam [ 96], SMART [ 97], Kog [ 98], and Conserved Domains Databases (CDD) [ 99].

The tool RPSBlast [ 33] was used to search for conserved protein domains in the Pfam [ 81], SMART [ 82], Kog [ 83] and Conserved Domains Databases (CDD) [ 35].

The tool RPSBlast [ 179] was used to search for conserved protein domains in the Pfam [ 181], SMART [ 182], Kog [ 183] and Conserved Domains Databases (CDD) [ 184].

The program reverse position-specific BLAST (RPS-BLAST) [ 18] was used to search for conserved protein domains in the Pfam [ 166], SMART [ 167], Kog [ 168], and conserved domains databases (CDD) [ 20].

Putative domains were predicted with the Conserved Domains Database (CDD) [28] and InterProScan [31].

Domain analyses of Tetherin proteins were performed in Pfam domains database (http://pfam.sanger.ac.uk).sanger.ac.uk

Blast in NCBI conserved domains database (CDD) was used to identify PBP_GOBP (pfam01395) or PhBP (smart00708) motifs.

Web-based software and databases were used to manually curate predicted genes after comparing data to public databases (COGs [16], Conserved Domains Database [17] and InterPro [18]).

A search of Conserved Domains Database (CDD) revealed that Bgl6 is a member of glycoside hydrolase family 1 (GH1).