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In both studies, a NDR flanked by increased nucleosome assembly was documented in intergenic regions but, with a transcriptome available, Ammar et al. [ 57] were able to define the location of the NDR relative to the sites of transcription initiation rather than, as here, to translation start codons.
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Compaction by reduction of intergenic space and number of introns has also been documented in P. carinii and E. cuniculi, respectively [24].
Although rare, scrambled or intergenic RNA molecules consisting of exons originating from distinct genes through a trans-splicing reaction have also been documented in vertebrates.
The small fraction of peaks not corresponding to repetitive elements were found mainly in intergenic regions.
Furthermore, an abundance of homoplasic SNPs in intergenic region might affect the transcription of related genes.
We found that the methylation level of non-CpGs in genic regions was higher than in intergenic regions (Fig. 1d).
Because CTCF is typically enriched in intergenic regions rather than within gene bodies, correlation analysis compared peak RPKM.
About 61.07% of these repeats were distributed in intergenic spacer.
CTCF bound predominantly in intergenic regions while RNAPII and MYC preferentially bound to core promoter regions.
Of the potential SNPs, 80% were located in intergenic regions and approximately 5% in coding regions.
Greater than 83% of the lsSNPs were located in intergenic regions.
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