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The software, source code and documentation were downloaded from http://telethon.bio.unipd.it/bioinfo/reef/.it/bioinfo/reef/
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The target fold difference factor was left at 2. Software and documentation was downloaded from the Susko and Roger 2004 website [ 19].
These solvers and their documentation can be downloaded for free.
The algorithm is made open source and the Matlab code including documentation can be downloaded from www.models.life.ku.dk.ku.dk
Binaries, source code and documentation can be downloaded from http://mzjava.expasy.org and https://bitbucket.org/sib-pig/mzjava.
SPIERS is suggested as a good starting point for anyone new to virtual paleontology the program and comprehensive, up-to-date documentation can be downloaded from: www.spiers-software.org.org
Source code and documentation can be downloaded from http://hmmer.org.org
The source code, Makefile for Linux compilation, test set and documentation can be downloaded (http://software.compbio.washington.edu/fast_protein_cluster).edu/fast_protein_cluster
Project name: LineageSpecificSeqgen LineageSpecificSeqgen, including the source code and documentation, can be downloaded from http://awcmee.massey.ac.nz/downloads.htm.htm
A MATLAB toolbox containing the computational routines, precomputed oligonucleotide signatures for 1013 reference organisms and documentation can be downloaded from http://gobics.de/peter/taxy.de/peter/taxy
Availability: The toolbox and the corresponding documentation may be downloaded from: http://www.iim.csic.es/~amigo Contact: [email protected] Dynamic modeling and simulation are becoming standard approaches to understand complex biological systems.
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