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The documentation of variants in ACTG2 and MYH11 thus points to the involvement of the contractile apparatus of the smooth muscle in MMIHS.
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This can then be adjusted subsequently (i.e., made less stringent) if no variants with a strong candidacy for causality are found after filtering (also see Best Practices section of GATK documentation for variant analysis).
Several large-scale projects, such as HapMap and 1 K Genome Project [ 6, 7], have made significant progress toward documentation of all common variants in several human populations, and laid the basis for the success of current generation of genome wide association studies (GWAS) [ 28].
Variant filtration was performed following best practice documentation of GATK version 4. The snpEFF software [ 28] together with the UMD3.1/bosTau Ensembl annotation was used to predict the functional effects of detected variants.
Variant filtration was performed, following the best practice documentation of GATK version 4. The snpEFF software [ 26] together with the UMD3.1/bosTau Ensembl annotation was used to predict the functional effects of the variants detected.
There are lots of variants.
Tiny neighborhood groceries carry dozens of variants.
Overall, 35.9% of variants were detected.
Secondly, specific documentation of DENV serotypes that firmly establish the circulation of different viral variants was not performed due to logistic and financial constraints.
The documentation of extensive V3 sequence diversity, coupled with the rapid expansion of rare variants in response to a drug selection pressure highlights the extraordinary challenge HIV diversity poses for preventive or therapeutic vaccines targeting areas of similar sequence heterogeneity.
The Havana annotations include detailed documentation of the data that support each component of a main reference variant for each gene, as well as for each variable component for alternative transcripts of the gene.
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