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In addition, the docking type of 1F2T 6) or 1Y96(15) is different from the typical type as mentioned above.
Because the docking type of 1AY7 0), 1CAU 2), 1EAY(4), 1WHM 12), 1WRD 13), 1XG2(14), and 2F9Z(16) is "edge-to-edge", the affinity scores S affinity are low (ie, under 7.54σ) for almost all the ligands.
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Dry dock, type of dock (q.v). consisting of a rectangular basin dug into the shore of a body of water and provided with a removable enclosure wall or gate on the side toward the water, used for major repairs and overhaul of vessels.
Dry dock, type of dock consisting of a rectangular basin dug into the shore of a body of water and provided with a removable enclosure wall or gate on the side toward the water, used for major repairs and overhaul of vessels.
The complex structures of 1D4V(3), 1EM8 5), and 2HSN(18) are "point-to-point" docking type.
We call their docking type "edge-to-edge".
The common feature of those complex structures is that, except for 1F2T 6) and 1Y96(15), they have a typical docking type that we called "surface-to-surface".
For molecular docking, five types of interaction potentials were represented: (1) van der Waals potential for a hydrogen atom probe; (2) van der Waals potential for a heavy-atom probe (generic carbon of 1.7 Å radius); (3) optimized electrostatic term; (4) hydrophobic terms; and (5) loan-pair-based potential, which reflects directional preferences in hydrogen bonding.
According to the CAPRI community-wide protein protein docking experiment, this type of approximation gives good results for a large fraction of complexes (Lensink and Wodak, 2013).
Prepare the proper rope (or line) and use stern lines to secure the stern, spring lines to control movement fore-and-aft, fender ties to tie up the boat fenders and the correct bow and dock ties to fit the type of dock you will be using.
Depending on the type of docking station you're using, it may also be possible to connect your laptop while it's open and running, but if you're using a separate monitor, this can sometimes be distracting.
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