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Cygnus does not dock directly with the ISS but is moved to its docking position by the ISS's robotic arm.
In this paper, we present a method of assisting the URV operator to identify the most appropriate docking position in the context of a desired dexterous workspace.
For the single-headed cross-bridges, we believe the companion head is either mobile or remains close to the relaxed state docking position on the thick filament shaft producing the residual density of the myosin shelves spaced 14.5 nm apart.
Docking position with the lowest energy was found most often during the docking procedure.
Residue Arg-120 may be found in TM1 inside the cavity, close to the Pi docking position.
FOG1 was found to exhibit low stability after RbAp48 binding; the peptide displayed significant movement from the initial docking position, a phenomenon which matched the docking results.
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Currently, the operator intuitively determines docking positions.
It is shown that mobility of the protein atoms improves docking positioning accuracy.
Dependence of the docking positioning accuracy is investigated as a function of parameters of the docking algorithm and the number of protein moveable atoms.
These docking positions constituted 42% of all observed docking sites of OT-GKR.
Then we insert lysine K85 next to the major groove of DNA at the dyad axis, as it was found to be in 27 out of 30 top-ranked docking positions [28], and oriented the globular domain so that the residues involved in DNA binding (R42, R47, R73, R74, R94, K40, K69, K85, K97, H 25 and H62) are making close contacts with the entry and exit linkers.
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