Sentence examples for docking parameters from inspiring English sources
The Glide docking parameters used here are given in Additional file 1: Table S3.
Docking parameters were modified as follows: ga_runs = 128, ga_num_evals = 5,000,000.
Default GOLD docking parameters were used with Gold-score and Chem-score as scoring and rescoring functions.
For docking purpose, default docking parameters of MOE is used such as Triangle Matcher Algorithm with two different rescoring functions.
Identifying optimal docking parameters for a target protein prior to virtual screening can improve experimental hit rates.
Default docking parameters were utilized.
Docking parameter file on the other hand contains information about the docking algorithm to be used.
After making gpf, 44 docking parameter files were made using Lamarckian genetic algorithm.
Docking with AutoDock requires preparation of two kind of files, gpf (grid parameter file) and dpf file (docking parameter file).
With grid map reuse enabled, the precomputed grid maps, receptor and docking parameter files are loaded at the node level and reused for each additional docking.
Glide was used to study the interaction of ligand-RXRα complex (LG100754 and N-6) in the suite of Schrodinger with default docking parameter settings.
