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The docked poses generated from docking into this mutant also had a significantly increased RMSD variation compared to wild type, suggesting that the ginkgolides were located in a less energetically favorable position.
Agonist docking into OAR2 model was done using LigandFit.
The linked compounds are further evaluated by docking into the candidate pocket of t-PA.
Subunits can be identified using atomic structure docking into the EM maps, labeling, or deletion studies.
Also, the molecular docking into the NS3 active site was examined using Discovery Studio 2.5 software.
Molecular docking into active site of HIV IN was also performed on 1WKN PDB file.
Furthermore, AutoDock molecular docking into PTK has been done for lead optimization of these compounds as potential PTK inhibitors.
The molecular docking into TRK (PDB: 1t46) was done for the optimization of the investigated compounds as potential TRK inhibitors.
Furthermore, AutoDock molecular docking into PTK (PDB: 1t46) has been done for lead optimization of the aforementioned compounds as potential PTK inhibitors.
On the whole, we found that molecular docking into Ls binding site generally scores better than when a α7 homology model, Bt or Ac crystal structure is used.
The default AD4 behavior is to load all grid maps required for a specific docking into memory from the file system and to release that memory at the end of the docking.
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