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F1000Research: Dataset 1. Pharmacophores, receptor ligand models and docking data for FDA-approved drugs inhibiting the Ebola virus, 10.5256/f1000research.57410.5256/f1000research
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Response: The Libdock scores for the best poses are in the '4IBI Libdock docking data best poses" file.
It executes/manages molecular docking data-intensive experiments for discovering novel drug targets using AutoDock and Auto Dock Vina, as they are the most popular and frequently used tools for docking.
One map of the Manchester docks includes target data for a Hovis mill, which still stands today.
The data for docking scores indicated that glycoside compounds including licuraside, hesperidin, and glycyrrhizin were the best components for the c-kit because they had the highest docking score of all the molecules.
The restraints derived from the NMR experiments were used as input data for docking calculations for the human cytochrome c−Bcl-xL system with the program HADDOCK [19] and unequivocally define the interface on both proteins.
The Docking wizard is used for specification of input data for protein ligand docking calculations.
The data for the docking scores indicated that caspase-1 was the best receptor for RA due to its high docking score relative to the other proteins.
Figure 9A presents the findings for pose 1 docked onto the A1 monomer, and Figure 9C presents data for pose-1 docked onto the dimer (A1-B1).
The use of constraints from experimental data for improving the docking poses will be presented.
53 In Figure 4 we can see the high correlation between the hot-spot predictions from docking 53 and the known experimental data for the IL4 IL4 receptor α chain.
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