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SAM ligand docked with both reference and targeted proteins active site (Fig. 7), and the docking results revealed that for both the bindings, the binding energy was similar (Table 4).
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Explicitly then, our determination of an MVP monomer is that it will form a vault particle by meeting both our two I-TASSER cut off criteria and then docking with both a negative RosettaDock energy score and the majority of the 1,000 models produced by RosettaDock clustering around this structure.
Consistently, the amino acids Leu17 and Phe19 of A1 monomer were common when the dimer (A1-B1) was docked with asiaticoside by both the Molegro Virtual Docker and PatchDocker.
The optimized structures of the test set were then docked with Schrodinger's GLIDE software using both SP and XP scoring functions with a rigid protein, flexible ligand, and rigid peptide (when docked with peptide) [65 68].
It docked with Columbia at 5.35pm.
The shuttle docked with the space station at 8 40 a.m.
After the shuttle docked with the station, Cmdr.
The starboard truss of the International Space Station while Space Shuttle Endeavour docked with the station.
The HTV can spend more than 60 days docked with the ISS.
The Crew Dragon capsule docked with the International Space Station a day later.
Earlier this month, the Shenzhou-8 successfully docked with the Chinese space laboratory Tiangong-1.
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