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In the present study, we used only high quality regions (quality value ≥ 25) of raw shotgun reads from three different sets of genomic DNAs, which we used for determining the draft genome sequence of C. intestinalis[ 1].
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Announcements of that sort have been based on one of two types of tests: Y-DNA (which follows an unbroken line of males, popularly called the surname line) or mitochondrial DNA (which we inherit from our unbroken line of mothers).
Thankfully, our cells contain a further layer of protection, in the form of a variety of 'toolkits' that can repair damaged DNA (which we've discussed at length in this post).
Our work has demonstrated the successful combination of the operating principles of DNA-based nanomechanical device with the unique molecular recognition properties of DNA, which we believed could open an exciting avenue in the design and construction of easy-to-handle, cost-efficient, reliable and high efficient functional nanostructure.
The transcriptional silencing of Dnmt1 may be responsible for the widespread passive hypomethylation of genomic DNA which we detect on the example of pericentromeric repeat sequences.
One hypothesis is that these two looped states correspond to two different configurations of the Lac repressor molecule and its attendant DNA, which we will refer to as the "open" and "closed" configurations.
The almost complete depletion of oxidized DNA which we exclusively observe at 24 hours after 0.2 Gy, could be part of a redox skin's strategy to rescue tissue integrity, as suggested also by the indirect evidence of the differential over expression of HMOX-1 only in the 0.2 Gy irradiated mice.
We used human Alu repeat as a marker of human DNA, which we extensively used previously.
We used PCR to amplify DNA, which we then sequenced using blaTEM, blaSHV, and blaCTX-M primers (9 ).
If the second incubation lacked additional protein, we observed a small but reproducible loss of DNA, which we interpret as spontaneous DNA unloading.
With this approach, H3K4me3 ChIP DNA was measured to ca. 700 pg DNA, which we pooled to obtain the 2 ng sufficient for robust amplification (Methods).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com