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Three ST28 strains lacking 89K PAI exhibited the unique DNA pattern of pulsotype D; these were classified into cluster XVI.
A unique DNA pattern of pulsotype D, classified into cluster XVI, was found for 3 strains with ST28 isolated from nonfatal cases in this study.
As literature often suggests to use the highest possible order, it is hence common to consider m = 6 or more (for a DNA pattern of size h ≥ 8).
With enlarged nucleotide sequences (from −100 to +24), we detected, for high ribosome occupancies exclusively (first quartile), a conserved DNA pattern of 8 nucleotides whose sequence was A[CA]TGACAG.
In other words, it is an estimate of the number of individuals which would have to be analyzed in order to find the same DNA pattern of a randomly selected individual.
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Two of the mitochondrial DNA patterns of D. hansenii exhibited the highest production of the volatile compounds involved in the dry-cured flavour.
Marked differences in volatile compound production were found between D. hansenii and C. zeylanoides and between the mitochondrial DNA patterns of these species.
We evaluated the levels of sequence coverage, genotyping precision, sensitivity and mixed DNA patterns of a prototype version of the first commercial forensic NGS kit: the HID-Ion AmpliSeq™ Identity Panel with 169-markers designed for the Ion PGM™ system.
The DNA patterns of the included strains had not previously been observed in the IS6110 RFLP database, and where therefore unlikely to have been recently transmitted in Norway after 1993.
GSPC provides an approach complementary to BLAST search algorithms, taking advantage of properties of DNA patterns of nucleotide usage rather than nucleotide alignments.
Figure 2 presents examples of E. coli H fingerprints showing identical DNA patterns of isolates from the bowel and the blood.
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