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We created a second dataset (group-SubMultiProteins∶DNA) from group-MultiProteins∶DNA which consisted of 91 structures (this number is smaller than 92, because some of the proteins do not have direct contact with DNA), each of which was a sub-structure containing only one protein unit plus DNA.
In PBL DNA, each of the DMRs analysed revealed intermediate levels of methylation, ranging between 35 and 50%, which is consistent with methylation levels if only one parental allele is methylated.
With some rare exceptions (Crosland and Crozier 1986), nuclear genomes of animals and plants are made not of a single but several molecules of DNA, each of them forming a highly organized structure called chromosome.
Since each of the training sets contained a different subset of the 73 known TFBS and different pieces of random human DNA, each of them produced a different collection of prediction systems.
The pSM2 library version 1.3 comprising 15,148 constructs targetting 9,392 human cancer associated genes was amplified and each 96 well plate used to prepare a pool of plasmid DNA; each of the 100 pools contained between 150 to 200 different shRNAmir constructs with each gene being represented by 1 to 3 shRNAmirs.
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First, she synthesized 18 different stretches of DNA, each consisting of 15 base pairs.
The density (number of repeat per Mb of DNA) of each class of repeats was computed for each kind of breakpoint region.
Next, a PCR was performed on 100 ng of plasmid DNA, for each of the 3 DNA isolates.
A pooled DNA sample (400 ng of DNA from each of the six strains) was also sequenced, generating 40× coverage of the pool.
MCPyV DNA levels were 5 and 11 copies/ng of DNA in each of the 2 positive buccal swabs.
The raw data for genome assembly are a set of DNA strings, each of which derives from the chemical sequencing of an amplified DNA molecule.
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