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For the mitochondrial DNA data set, we investigate the effects of sampling density within the mouse lemur radiation (genus Microcebus).
To evaluate the evolutionary history of this unique skink, and specifically to test the "relict" and "recent immigrant" hypotheses, we conducted Bayesian relaxed molecular clock divergence dating analyses of an extensive, multi-locus DNA data set including all Plestiodon species from the eastern United States and the Bermudan P. longirostris.
Also chloroplast DNA rps16 [ 33] and a large chloroplast DNA data set [ 34] show agreeing phylogenies.
However, other steps in the procedures and analyses need to be optimized to generate a robust ancient DNA data set.
Next, using the R package PhyloSim [ 43], we simulated the evolution of a 1 Kb DNA data set over each of these trees.
The chloroplast DNA data set supporting the results of this article is available in GenBank, with the accession numbers KT933356 KT933397.
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In the past, research groups that had gone through the trouble and expense of building DNA data sets have hoarded it for themselves, so that they could be the first to mine it for publishable insights.
The importance of studying paired mRNA and DNA data sets has not yet been clarified and past work in the field has, in fact, demonstrated low levels of homology between metatranscriptomes and metagenomic scaffolds.
The modern and ancient DNA data sets were obtained from different stocks (Bering-Chukchi-Beaufort Seas and Spitsbergen, respectively), but there appears to be little molecular or morphological evidence for the discreteness of any of the five designated stocks of bowhead whales [73], [75], [76].
NS and UK conducted testing with DNA data sets.
Forty genes were in common between the amino acid and DNA data sets.
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