Sentence examples for dna coordinates from inspiring English sources

The DNA coordinates (chain E, F, G, H) without moxifloxacin were inserted in the complex and defined as fixed atoms.

The genomic DNA coordinates for the PDE2 insert are Chr XV 1011626 1019437.

Consequently, the reporting of variants in genomic DNA coordinates using RefSeq genomic contig sequences has been cumbersome, especially if the gene of interest lies on the reverse strand.

Variation will be reported using HGVS nomenclature [ 4] and the use of an LRG as the reference standard supports all coordinate systems: using genomic DNA coordinates, LRG_1 g.8463G>C is equivalent to NG_007400.1 g.8463G>C; using coding DNA coordinates, LRG_1t1 c.572G>C is equivalent to NM_000088.3 c.572G>C; using protein coordinates, LRG_1p1 p.Gly191Ala is equivalent to NP_000079.2 p.Gly191Ala.

Figure  2 represents circular genomic map of S. rhizophila DSM14405T, wherein DNA coordinates are presented and coding sequences (CDSs) on both the leading and lagging strands are assigned colors with respect to functional gene groups.

We next tested the performances with respect to the size of the input NGS data files adopting two strategies: random sampling of reads and random sampling of DNA coordinates.

Therefore the majority of mitochondrial proteins are encoded by the nuclear DNA, coordinated by the gene expression between the two genomes precisely.

The prototype for a transcription factor controlled by posttranslational modification is E. coli Ada protein, a chemosensor that both repairs methylation damage in DNA and coordinates the resistance response to genotoxic methylating agents.

Our results show that DNA supercoiling coordinates gene expression with metabolism.

This program returns a score threshold and, for each putative horizontally acquired DNA, its coordinates and score.

tBLASTx searches using the sequence of Submariner_Ac1 against the A. castellanii genome retrieved one more Submariner-like DNA transposon (coordinates AEYA01001733.1: 913–2735), which we name Submariner_Ac2 (e-value = 1e-125).