Sentence examples for dna alignment and from inspiring English sources

In this study, in order to differentiate between Eunicea and Plexaura gorgonian corals using molecular and morphological data, we present a phylogeny based on the predicted secondary structures of the ITS2 sequences (molecular morphometrics) and contrast it with traditional molecular systematics based on primary DNA alignment and Bayesian analysis.

Multiple locus analyses of amino acid and DNA alignments and multiple epoch integration.

The DNA alignments and deduced amino acid sequences were examined using the BLAST program (National Center for Biotechnology Information, USA).

The BLASTX amino acid based algorithm provides alignments of the six-frame translated EST relative to the protein database and thereby is more sensitive to elements of functionality and homology than DNA alignments and accurately reveals reading frames [ 41, 59].

Local alignment algorithms, combined with the removal and reinsertion strategy of repeat elements, have been shown to reduce the number of gaps in DNA alignments and increase sensitivity [ 22, 47].

Through a combination of multispecies genomic DNA alignments and expression data, candidate regulatory elements in a parasite of choice can be identified to drive expression of drug resistance cassettes.

For Network clustering, sequences were aligned using DNA Alignment 1.1.21 software and relationships were analysed using NETWORK 4.1 [ 34] both software available at fluxus-engineering.com [ 36].

Phylogenetic trees were reconstructed using DNA alignment of pre and post-therapy NS5A sequences corresponding to each patient in the study.

To investigate the effect of mutational saturation, we employed phylogenetic analyses based on the two data sets: (i) DNA alignment including only first and second codon positions, and (ii) DNA alignment with all codon positions included.

To conduct a thorough stress test, we simulated a DNA alignment with 1481 taxa and 20 000 000 bp using SeqGen (Rambaut and Grass, 1997).

While the genes are very similar overall, there are two different sources of evolution (Red and Blue) as shown by DNA alignments b) and average distance tree.