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Our method provides an alternative to traditional approaches to partitioning, such as dividing alignments by gene and codon position.
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Coverage of a BLASTN search was calculated by dividing alignment length by transcript length and multiplying by 100.
Local conservation was avoided by dividing the alignment length of each aligned sequence by its total length.
To enhance the speed of the alignment step, we use a tiered approach instead by dividing our alignment process into two steps: a fast initial assortment of the reads followed by a complete gapped alignment.
Based on whether the aligner support splice reads alignment, we can divide aligner into two categories: unspliced aligner and spliced aligner.
As a result of compromises made to get the U.S. Highway System approved, many routes were divided, with alignments to serve different towns.
We divided the alignments into four segments (of 228 279 nt or 76 93 aa).
This route was moved to a multilane divided highway alignment north of Rutherford by 1937.
In 1986, US 72 was moved to a new divided highway alignment to the south through Tishomingo County.
In 1939, the divided highway alignment of DE 2 was completed between DE 7 and Elsmere, with the exception of the bridge over the Red Clay Creek in Cranston Heights.
To compensate for the rate heterogeneity in the data we divided the alignment into twelve partitions, each with its own individual GTR matrix, gamma distribution, proportion of invariable sites and base frequencies.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com