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Microbial diversity was evaluated by PCR-DGGE.
The pattern of microbial diversity was evaluated through a clustering procedure using the unweight pair group method with arithmetic mean.
Functional diversity was evaluated by determining the ability of microorganisms to grow on 31 substrates using Biolog®EcoPlates in combination with a most probable number (MPN) approach.
Diversity was evaluated by the number of different targets/indications covered by the selected subsets.
Microbial community diversity was evaluated by Shannon diversity index (Shannon 1948).
Alpha diversity was evaluated by calculating six indices, specifically the Observed-species, Chao1, Shannon, Simpson, ACE and Good-coverage indices.
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Genomic and resistance gene homolog diversity were evaluated across prairies using Shannon's index and by averaging haplotype dissimilarity.
Amino acid diversity demonstrated the same general trend as nt diversity and much of the variation among lineages was reduced when aa diversity is evaluated on the level of sequence variation (aa Sn; Fig. 3).
An alternative approach to speed up the process of gene discovery associated with quantitative traits that complements map-based cloning is association studies where candidate gene diversity is evaluated across natural populations and polymorphisms that correlate with phenotypic variation are identified [23].
Various measures of molecular diversity were evaluated on the final dataset of 84 mitogenomes, which included 83 different haplotypes.
The contribution of a population to the diversity is evaluated by computing the loss or gain of diversity ΔGD when the population is removed.
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