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Salinity and DO have a great influence on microbial formation and diversity in this study.
Therefore, the analysis of diversity in this study accounts for both factors, by using a predicted instead of actual diversity index.
I only look at phylogenetic alpha diversity in this study, however, the concept of comparing phylogenetic composition is related to phylogenetic beta diversity, because site differences can be compared, however, the method of calculating distances between sites is different.
In general, the six parasite lineages identified in this study that are also known from outside the region exhibited the greatest local abundance and host diversity in this study.
Even with a one-eighth pyrosequencing run we have not attained saturation of allele diversity in this study—a telltale of much variation we are still missing.
We don't believe that PCR error is significantly impacting estimates of genetic diversity in this study as we have included only clones found independently in two or more separate birds.
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We found strong correlations between microsatellite heterozygosities reported by Shikano et al. [13] and mitochondrial nucleotide and haplotype diversities in this study.
The cryptic diversity found in this study indicates that the species diversity of lethal amanitas is strongly underestimated under the current taxonomy.
In summary, the genomic diversity reported in this study is likely to be an underestimate of the clonal diversity in the tumor.
Bacterial diversity detected in this study is shown in (Fig. 1).
A collection of ~400 diverse O. sativa accessions from 79 different countries, including both landraces and elite varieties, along with ~100 accessions of O. rufipogon from 14 different countries in Asia forms the basis for the germplasm diversity panel in this study.
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