Sentence examples for diversity alignment from inspiring English sources

We propose an emergent design approach focussing on three main concepts: diversity, alignment and knowledge generation, and operationalise this framework into a coherent set of strategies and tools.

Whereas multiple alignments of rbcL gene sequences from the 19 accessions revealed 1.26% parsimony-informative sites with 0.68% interspecific sequence diversity, alignment of nucleotide sequences of amplicons representing the matK gene revealed 4.97% parsimony-informative sites and 2.81% interspecific sequence diversity.

Because of sequence diversity, the alignment had to be restricted to the omnipresent Chitin_synth2 Pfam domain area (supplementary fig. S3, Supplementary Material online).

Ordering the nonmammalian sequences by decreasing identity to human CHK2 and sequentially assessing overall sequence diversity, the alignment exceeded a maximum parsimony estimate of an average of three substitutions per position upon inclusion of the sea urchin (Strongylocentrotus purpuratus) sequence (Supplementary Table S2 in Additional file 1).

Regulatory RNAs in bacteria were chosen due to the large size and diversity of alignments available, as well as the structural data that verify many of the predicted structures.

Additional calculations are made which provide a measure of the sequence diversity in the alignment.

To assess the allelic variation of individual KIR genes we similarly calculated their nucleotide diversity to an alignment of KIR sequences individually, each beginning 250 bp upstream of the start codon and extends throughout the gene to end at the polyadenylation site.

We also analyze the effect of alignment diversity on the accuracy of catalytic residue prediction.

List of assemblage AI and AII orthologs and the nucleotide diversity of the alignment.

To measure the impact of evolutionary divergence on method performance, we controlled the sequence diversity of the alignment used.

This pattern of genetic diversity along the alignment may be summarized by linkage disequilibrium, and used to build recombination maps that describe recombination rate along the genome [ 9– 11].