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The comparison reported isolate-specific genomic regions, genes under diversifying selection, and a large number of transposon-like elements with diversified sequences [ 26].
Signaling peptides encompass a myriad of highly diversified sequences showing variation within and across species and without a common phylogenetic origin.
Maize played an ambivalent role as driver for simplified rotation practice in permanent cropping on the one hand and as element of diversified sequences on the other hand.
Moreover, sequences in the dendogram displayed a wide-spread distribution, including a clade formed only by sequences from our libraries (clade 4), showing that we have contributed with diversified sequences encoding glycine-rich proteins from our ESTs database.
This finding suggests that the BmAgo2-associated ~20nt and ~27nt small RNAs comprised a large number of diversified sequences with low expression abundance, whereas the expression of the ~33nt small RNAs occurred at an extremely high level (Additional file 1: Figure S2B and C, Additional file 2: Table S1).
The conserved His residue (H43 in all3650) is present in most members of the COG4636+ family, with the exception of a small lineage of closely related proteins (represented by gll1896 from G. violaceus, GI: 37520579) in which it is substituted by Gln, and a larger group of more diversified sequences, in which it is substituted by Thr or Ser.
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In the short term such small exchanges would work to diversify sequences, and may contribute to the generally high level of variation.
About 60% of the investigated area was cropped with the ten largest crop sequence types, which represent the full range of crop pattern diversity from continuous cropping to extreme diversified crop sequences.
A comparative analysis of this sequence with other legume chloroplast genomes indicates that these genomes are highly diversified in sequence and organization.
Surprisingly, we found that the V1R genes are highly diversified in sequence among some lineages of cichlids because of multiple episodic accelerations of amino acid substitutions.
Extensive variation in the DNA-contacting recognition helix (RH) or 'P-box' suggests that C. elegans NHRs, like C2H2 and bHLH families, have diversified DNA-sequence specificities, and that many will recognize novel motifs (Van Gilst et al., 2002).
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