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Sequence alignment of phylogenetically diverse sequences of the luminal domain of LAP1 and LULL1.
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For the generation of phylogenetic trees, the most diverse sequences of each subgroup were aligned with ClustalW [ 18].
In addition to the highly enriched miRNA sequences, there were also lowly expressed but much more diverse sequences of other ncRNAs, such as rRNAs, tRNAs, mRNAs, snoRNAs and other sRNAs in the Rfam database.
Sequence alignment of phylogenetically diverse sequences of Torsin.
It was occupied by a diverse sequence of human cultures that were different from both the farming populations of the Yellow River Valley and the nomads of the Eurasian steppe [ 1].
Two years ago, a British research group found that a more diverse sequence of seven nucleotides could also form a foursome.
Collectively, the structurally and functionally annotated InDel markers derived from the diverse sequence components of the genome/genes are specifically responsible for frameshift mutations due to disruption of ORFs (open-reading frames) in the coding regions.
While the unresolved nature of clade A could be ascribed to artifactual issues related to the alignment of diverse sequences in the trees presented in Figures 1 and 2, reconstruction of the 16S rRNA tree with only the Columbicola spp. clade A symbionts (resulting in a relatively unambiguous alignment) did not improve the resolution of the tree.
Furthermore, differences in the phylogenetic tree structures for the VP1 unique (VP1u) region and the rest of cap highlighted the mosaic nature of cap gene in the AAV population: two dominant forms of VP1u sequences were identified and these forms are linked to diverse sequences in the rest of cap gene.
Shotgun sequencing reads can often be identified as homologues of a gene family if there are a reasonable number of diverse sequences from the family in existing databases (e.g., [ 5]).
We used accurate all-atom replica-exchange molecular dynamics (REMD) simulations to study the relative stability of diverse sequences in the LHBH conformation.
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