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Haplogroups/subhaplogroups B, C1, E1 and F were characterized by very similar, average amounts of sequence divergences based on both the complete mtDNA and synonymous mutations only.
These genera had relatively short internal branches but still generally showed high bootstrap support (Figure 1). Figure 2 presents an overview of sequence divergences based on a comparison between maximal intraspecific and minimal interspecific distances for all species for which multiple samples were included in the analysis.
Total genetic divergences based on concatenating the two nuclear loci ranged from 0.1 to 6.1 % within clades and from 1.9 to 19.1 % between clades.
We hypothesized that the distribution ranges differ in climatic niche properties, leading to species divergences based on selection on species specific physiological traits.
The establishment of differing monsoon regime during the Pleistocene on either side of the Tanaka Line probably contributed to species divergences based on our crude estimates.
Since there is a lack of fossils that would be useful for calibration of the tree within the family, we used a 37 Ma for Rhinolophus-Hipposideros split (37 Myr, [ 43, 65]) to calibrate the tree (since the age of the fossil represents the minimum date of the fossil lineage occurrence, we provided estimates of minimum dates of divergences based on ML branch lengths).
Similar(53)
Both Genera Aquifex and Thermus are closely related based on genome signature-based phylogeny, despite their apparent divergence based on other criteria [ 36].
Remarkably, there is a huge divergence based on region.
The support operator method designs mimetic finite difference schemes by first constructing a discrete divergence operator based on the divergence theorem, and then defining the discrete gradient operator as the adjoint operator of the divergence based on the Gauss theorem connecting the divergence and gradient operators, which remains valid also in the discrete case.
Substitution of this divergence operator for the previously used divergence based on central differences makes a dramatic improvement in the overall volume conservation that is observed in an immersed-boundary computation.
This time is consistent with estimates of the coalescence time for the major haplogroups of the Y chromosome of 138,000 years ago20 and 142,000 years ago21 as well as an estimate of ~140,000 years ago for African vs. Eurasian divergence based on multilocus resequencing4.
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