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The 3′ and 5′ LTR sequences of the same Copia- and Gypsy-type retrotransposons were aligned by ClustalW using default parameters, and the pairwise sequence divergence was calculated using the Ka/Ks calculator (https://code.google.com/p/kaks-calculator/wiki/KaKs_Calculator).
In contrast, the exact divergence was calculated, including derivatives with respect to depth, in the case of the finite difference simulation in the same period band.
Via computer software program for curve-fitting the radon buildup, a sufficiently exact extrapolation of the final activity A0 in Bq.m−3 was achieved, and the percentage divergence was calculated.
The percent amino acid sequence divergence was calculated from the output of the paired alignment.
Synonymous and nonsynonymous sequence divergence was calculated using the yn00 program in the PAML package [35].
The percentage of divergence was calculated by comparison with 4 different EBLV-1 isolates.
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Maximum finite-time Lyapunov exponents, representing short-term (λmax-s) and long-term (λmax-l) divergence were calculated from the measured trunk kinematics to estimate the local dynamic stability of the lumbar spine.
The horizontal gradient and the horizontal divergence were calculated by fitting of the plane surface to the data from the three observation stations as in Davies-Jones (1993).
Relative binding ratios and percent divergence were calculated as described previously [11].
Nucleotide and haplotype diversities within evolutionary lineages, as well as total and net DNA divergence were calculated using DnaSP 4.20.2 [73].
The mean diversity and divergence were calculated for each subject's anatomical sites (plasma RNA, PBMC DNA, genital RNA, and genital DNA).
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