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We therefore focused on CNSs that have at most the mean divergence value of the protein-coding genes of the most diverged species to the reference genome.
After this failure, Rintarō receives a message from his future self, telling him that the way to save Kurisu without altering the events that led to him developing a time machine is to fool his past self into believing Kurisu had been killed and thus achieving the final divergence value of 1.048596%, which he dubs the 'Steins Gate'.
Finally, we considered the proportion of the mean divergence value of the coding regions to the nonsynonymous substitutions (see supplementary table S2, Supplementary Material online).
We also compared the mean divergence value of the coding regions with the average divergence of all gene and repeat-masked noncoding regions.
The mean divergence value of the coding regions was significantly lower than the average genomic noncoding divergence (t-test P = 0) in each lineage.
This value is similar in each lineage (∼0.06), suggesting that the mean divergence value of the coding regions is a reasonable threshold.
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This isolate showed divergence values of 24.2 27% nt (18.5 20.9% aa) compared to the squamatid sequences.
The divergence values of the elements between these species support this conclusion.
To plot the number of elements against divergence, values of individual divergence were grouped into bins of 0.5% and the number of elements in each bin was counted.
Finally, three historic B. rapa genomes, identified by the sequence divergence values of their syntenic segments, were reconstructed, clearly showing the trace of recursive WGD events.
The distribution of the divergence values of LTRs was significantly different between all species pairs (Mann–Whitney U-test, Bonferroni correction, P < 0.02).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com