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For later reference, it will also be useful to see the divergence on a fundamental level.
In order to recalculate nonsynonymous and synonymous divergence on a shorter timescale, the Multiz alignment was downloaded for all verified protein-coding genes containing at least one coding functional RNA secondary structure [34].
Semphy [ 46] was used by GERP to calculate the observed rate of divergence on a base-by-base basis.
Native Americans and East Asians, however, shared a recent common ancestor and have low genetic divergence on a genome-wide scale [ 37].
The availability of large collections of Expressed Sequence Tags (ESTs) for the Solanaceae now provides the opportunity to assess sequence conservation and divergence on a genomic scale.
We also see divergence on a within-region scale, the adaptive nature of which is unknown, but could be tested using reciprocal transplant experiments among population source locations within regions.
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Representing ecological or morphological or genetic divergence on an additive tree would produce a broader range of ED values, compensating for the weight currently placed on prob(extinction).
Today there is divergence on all points.
In the C A diagrams, steeper slopes led to a higher degree of divergence on hillslopes and a higher degree of convergence in the valleys than shallower slopes.
Two main authors (DW and VDM) selected independently studies published as full papers in English, and in the event of divergence on studies' selection, a consensus was reached through discussion.
In evolving P. abyssi and P. horikoshii, substrate preference presumably shifted stepwise both on the branch d (significant prevalence of positive selection for the "nucleotide transport and metabolism") and after divergence (on the branches a and b, as Figure 2 shows).
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