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The SS-approach reveals extremely divergent tandem repeats (pattern copy divergence level ∼50%) and regions of a new type of periodicity known as profile periodicity (33, 34).
Figure 14 Visualization of divergence level between pre-discretized and post-discretized twins datasets using 60% training and 40% testing data.
The method is tested on two model problems based on the qualitative features of the solutions obtained (i.e., dispersion or smoothness of potential vorticity contours) as well as on the increase in mean divergence level.
Cytochrome b gene divergence between the Madeira firecrest and the European bird is 8.5%, comparable with the divergence level between other recognised Regulus species, such as the 9% between the goldcrest and the golden-crowned kinglet.
At this divergence level, while 14 sequences of extant species would cover 100 Enterobacteriaceae species, 14 RASs would cover 120 Enterobacteriaceae species.
Although the divergence mainly resulted from the loop regions, the divergence of miRNA* strands also contributed partly to the high divergence level (Figure 3A and Figure 4).
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High divergence levels between the two copies of each trn might indicate duplication events followed by random loss and mutations in the anticodon.
High divergence levels could be detected among these homologous miRNA genes (Figure 3 and Figure 4).
Low divergence levels were observed (0.065%) also between Pachygrapsus maurus and P. marmoratus.
The consistence of divergence levels between the chromosomal and plasmid sequences strongly suggests the vertical inheritance nature of the plasmids.
This corresponds to the optimal divergence levels and so insures good accuracy of Bayesian prediction results reported here.
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Justyna Jupowicz-Kozak
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