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We therefore first of all used subsamples for relevant waves to check if the measure inconsistency causes any divergence in analysis and found no prominent difference in the role of perceived mobility.
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Some of the divisions reflect genuine and honourable divergences in analysis and strategy, in geography or economic strength.
The orthologous pair with the largest amount of sequence divergence in our analysis (8.7%, hsp67b2 #1) is not an outlier considering the range of sequence divergence evident across the entire transcriptome [ 38].
Genes with > 2 SD divergence indicated in bold NAH indicates No Annotated Homologue in the other sequence * probably frame shifted components of the same vacA related gene Genes with > 2 SD divergence in each analysis are indicated in bold NAH indicates No Annotated Homologue in the other sequence It cannot be assumed that all genes identified in this manner have been recently acquired.
However, other potential MDRs, such as SP1 motifs [ 85, 86] and members of the RFX family, did not show consistent human directional divergence in this global analysis.
Historical migration (coalescence of genes from Managua to Apoyeque) was estimated to be negligible (~10 migrations/thousand generations) and there was a single probability peak for population divergence in the IMa analysis (Additional File 4).
Because S7 intron data are not available for Channa-Parachanna representatives, only cytochrome b data were used in divergence date analysis, and therefore it was run as a separate analysis from the Bayesian inference on the concatenated dataset described above.
Likewise, the Densitree [ 62] depicting the posterior distribution of the 25,000 trees as inferred from the Bayesian divergence age analysis in BEAST suggests the most frequent tree topology to be identical to that obtained from ML and Bayesian analyses.
In analysis of divergence at different nucleotide sites between paths I and II (i.
LTR and SINE elements appear to have the strongest effects on expression divergence in rodents in our analysis.
The formula for calculating the divergence in the sliding-window analysis was as per Proutski et al. [ 21].
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