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These two strains have accumulated distinct sets of mutations, which is striking considering their very short divergence history.
In regards to the 'gene tree versus species tree' issue, it is generally accepted that the use of multiple loci would in principle provide a more complete picture of the divergence history for a group of closely related species [1].
Ideally, they would know the effective population size over the whole divergence history of two species.
To further explore the utility of AHE markers for evolutionary inference, we inferred divergence history parameters for the five lineage-pairs for which we had prior estimates of divergence history from population samples of transcriptomes [ 28].
Information about the anchored enrichment (AHE) sequence alignments used for inferring divergence history with the program 3s.
Overall, the network analysis reveals a general tree-like divergence history of the Triticeae with local episodes of reticulate evolution.
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In doing so, we both infer phylogenies and divergence histories for this group of lizards.
A comparison of species divergence histories across these eight triplets suggests that current geographic distributions alone are not reliable indicators of the model of species divergence.
I introduced a new model for estimating shared divergence histories across taxa from DNA sequence data within an approximate-Bayesian model-choice framework.
Here, we show that AHE loci, despite largely being conserved across deep phylogenetic scales, are sufficiently informative that they can be used to estimate such divergence histories.
Similarly, AHE has provided good resolution of phylogeny and divergence histories across closely related species and lineages of chorus frogs (Pseudacris; Lemmon et al., unpub. data).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com