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Carotenoid cyclase evolution involves both extensive horizontal gene transfer and paralogous duplication followed by functional divergence (Figures 5, 6 and 7; see also Figures S5, S6 and S7 in which taxa names and precise bootstrap values are shown).
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The economically important Lithodidae and Pandalidae exhibit markedly contrasting patterns of intrafamily divergence (Figure 3).
It involved further mutations (e.g. at position 3.37) and eventually led to the vertebrate SO, CHEM and PUR sub-families by divergence (Figure 4).
M66-2 aN16961961 share the downstream block D, also potentially added cassette by cassette at attI prior to strain divergence (Figure 5).
Median joining haplotype networks constructed for both captive and free-ranging white-tailed deer revealed extensive mitochondrial haplotype variation and divergence (Figure 2).
MDR serotype O11 strains, in contrast, clustered into CCs F, G, H and I (Figure 7) and showed an overall higher genetic divergence (Figure 1, Figure 2, Figure 3, Figure 4, and Table 3).
Alignment analysis of the T. castaneum chemoreceptor gene family (TcasGr and TcasOr) indicated that the family members share a high degree of sequence divergence (Figure S1C, S1D).
In a few additional cases, species were distinct, but were very similar genetically, such as Pteropus vampyrus and P. lylei which showed only 2% sequence divergence (Figure 2).
Mature miRNAs always were highly conserved across vertebrates, especially in seed sequences (nucleotides 2 8) and anchor sequences (nucleotides 13 16), while their passenger strands showed higher nucleotide divergence (Figure 2).
295 of 2567 apicomplexan- and 166 of 1744 Plasmodium-specific genes had interspecies correlation data and comparison of the distributions of interspecies correlations of these groups of genes suggested a tendency for these restricted groups of genes to exhibit increased levels of expression divergence (Figure 9).
For example, the fall armyworm, Spodoptera frugiperda, includes two barcode lineages with 1.3percentnt divergence (figure 2 c).
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