5) Group α, β, γ, δ, ϵ, and ζ genes diverged after the divergence between jawless and jawed vertebrates (and probably after the divergence between cartilaginous fishes and teleost fishes) and before the divergence between teleost fishes and tetrapods.
We constructed neighbor-joining trees (Figure 5a and Supplementary Figure S20) from distance matrices, and the Native American diverged after the divergence of the Sanganji Jomon from the modern East Eurasians in these trees.
Since most of these genes diverged after the divergence of the ancestors of rice and Arabidopsis thaliana, only a few of their functions could be implied from those of GH1 enzymes from Arabidopsis and other dicots.
The difference in mapping rate is in accordance with the prediction that the A, B, and C genomes of Brassica diverged after the divergence of Arabidopsis and Brassica lineages [ 6].
Out of these 877 congruent results, 688 pairs (78.4%) diverged before the GA split, 87 pairs (9.9%) diverged after the GA split and the divergence of 102 pairs (11.6%) could not be determined because of lack of support (polytomies).
Overall, functional divergence analysis supports that STIM-1 and -2 diverged after gene duplication and displayed shifts in the evolutionary rates in specific residues.
We have also included Dictyostelium discoideum, which is believed to have diverged after the plant-animal split but before the divergence of fungi from animals [ 46].
The phylogenetic tree indicates that the GLI1, GLI2, and GLI3 genes diverged after the separation of urchordates from vertebrates and before the divergence of tetrapods and bony fishes.
This indicates that the RHAMM/TACC genes diverged after the protostome/deuterostome split 833 933 MYA, but prior to the echinodermata/urochordate divergence (>750 MYA).
In the identical region of the two recombinants, three divergent nucleotides were found spanning the 5' crossover site, indicating that the regions had diverged after the first recombination event.
But opinions diverged after that.
