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Table 1 Rotation angle distribution in sequence Foreman.
We use different sequence similarity measures, phylogenetic and clustering methods in order to analyze the distribution in sequence space of roughly 1000 V3 loop sequences and their tropism phenotypes.
Polymorphic loci produce continuous distribution with real differences in sequence counts while monomorphic loci produce random continuous distribution in sequence counts.
In the three-domain collection (Fig. 3a), the genome class displays the broadest distribution in sequence randomness (Table 3): 86% of relative z-scores fall into the region of 0.9 5.0.
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In this study, the geographical distribution factor in sequence variations among these EBVs can similarly be observed from the alignments of translated amino acid sequences of LMP1 and EBNA-1 genes among these EBVs of different origins.
This feature distribution in both sequence and structural classes also asserts that swapping can be detected from combination of features from sequence and structural information.
Fig. 7 Spacecraft data distribution in the sequence foe eight sliding bins of X GSW projected on the GSW equatorial (left) and meridional (right) planes.
The comparably narrow GC distribution in the sequence data from single genome projects does not reveal this effect, and while backfolding might limit maximum obtainable read length, similar filtering steps would not be a prerequisite before e.g. subsequent assembly.
We evaluated the expected distribution in 28 sequence segments, given the average density of polymorphic sites in this data set.
Although the viruses from the NW behave in a uniform manner, the begomoviruses from the OW show a group/host specific distribution in pairwise sequence comparisons.
These residues are mainly localized in the regions of high helical propensity, and their distribution in the sequence makes one face of the helix highly positively charged, whereas the opposite face contains only negative charges.
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