Predicting the presence of differential MREs within distinct transcripts of the same gene can be rapidly and easily assessed browsing data of our computational analyses integrated in ALE-HSA21.
Two numerous modules communities are centered on two distinct transcripts of the nucleophosmin 1 gene (NPM1), which is associated with AML development [ 20], with enrichment for the terms 'ribonucleoprotein complex' (P =1.03e-29), 'chaPerone' (P =1.31e-10), and 'mitochondrion' (P =1.39e-10) and for the terms 'translational elongation' (P =3.58e-73) and 'ribosome' (P =2.17e-67), respectively.
In some samples, RT-PCR analysis showed that loss of protein expression was accompanied by non-random EWS-ERG RNA processing (figure 4B, lane 4), reflected by the presence of two distinct transcripts of about 250 and 500 bp.
The degradome sequencing data further supported two newly identified Eucalyptus miRNAs, which displayed two distinct transcripts of cellulose synthase as targets, detected only in the xylem sample (Eucgr.D00476.1 and Eucgr.H00939.1 in Phytozome).
Two distinct transcripts of DLG5 were observed differing by only 12 bp, which would predict the addition (or deletion) of 4 amino acids, but would not alter the translation frame of the gene.
Eight distinct transcripts of hemocyanin displayed molt cycle-related differential expression in this study, five of these correspond to subunits 1 3 and 5, previously isolated from C. magister.
Successful primer sets included those for three distinct transcripts of phenylalanine ammonia lyase (PAL1, PAL2a and PAL2b), a chitinase, a glucanase, a transposable element and a DNA repair enzyme (Table 3).
Thus, spatial proximity of distinct transcripts in the transcription factories might facilitate the production of chimaeric transcripts that in turn can be used as the signal of chromosome loci contact.
For both the 37,787 originals ESTs and the 14,410 distinct transcripts, the number of aligned ESTs (a.e). on the cDNA references (cDNA ref)., draft scaffold genome (d. scaf ., and draft assembly genome (d. assem).
Therefore, the change in expression patterns of distinct transcripts suggests the requirement of different development events from UNMs to GPGs.
SGEC were found to express three distinct alternate transcripts of the B7.2 molecule.
