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Zhou, H. & Zhou, Y. Distance scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction.
c x, c y, is principal distance scaled by λ in x and y directions (c x = cλ x and c y = cλ y ).
This is the converse of the topological ("Robinson-Foulds") distance, scaled to range from 0 to 1.
Likewise, the abscissa shows the center-of-mass distance scaled by the radius of gyration <img src="http://journals.plos.org/plosone/article/asset?id=info?doi/10.1371/journal.pone.0014428.e030.PNG" class= inline-graphic"/>.
Zhou et al. [ 16] derived two protein stability scales from atom-atom potential of mean force based on Distance scaled Finite Ideal-gas REference (DFIRE) state (S1) and a large database of mutations (S2).
Here, we used a Gaussian kernel on genetic distances with K ij = exp (− GD ij / θ 2 ), where GD ij is the modified Rogers' genetic distance (Euclidean distance scaled to fall between 0 and 1) between genotype i and j, and θ is a smoothing parameter which controls the rate of decay of K ij with increasing genetic distance.
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The x axis shows the positions of mapping, in 1-Mb windows, along Araip.B04 (red dots) and Aradu.A04 (blue dots), the latter with distances scaled so the homeologous chromosomal pseudomolecules are directly comparable.
Hipparcos refined the basis of this distance scale.
Together with nearby parallax stars, moving-group parallaxes provide the basis for the galactic distance scale.
Octeau, J. C. et al. An optical neuron-astrocyte proximity assay at synaptic distance scales.
Naïve estimates of quantum corrections suggest such a hierarchy in distance scales is unstable.
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