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A phylogenetic tree was constructed using the seven MML0050 alleles to determine evolutionary distance of the sequences.
The overall mean distance of the sequences from the 68 food products was estimated to be 0.16 nt.
Therefore, some researchers used the cumulative distance of every point to present the distance of the sequences [ 20, 27, 28].
In contrast to more simple amino acid conservation scores, evolutionary rates reflect the amino acid changes considering the phylogenetic distance of the sequences.
It is more accurate because it takes into account, by the tree T, the evolutionary distance of the sequences in the alignment 𝒜.
When we consider the distance of the sequences from the translation start site of their associated gene, we see enrichment for adjacency among both the CNEs and the pseudo-CNEs, decreasing with distance (Fig. 2d).
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From the previous discussion, we have the following theorem which is an extension of Theorem 5 of[11]: The minimum Hamming distance of the sequence of BCH codes defined by the matrices in Equation1 is greater than or equal to min{2t i + 1, for 0 ≤ i ≤ t}.
The silhouette value of a sequence in a cluster is defined as the difference between the average distance of the sequence to sequences in other clusters and to sequences in the same cluster.
The second kernel corresponds to the distance of the sequence to the pericentromeric and subtelomeric regions of the genome.
This node score considers the number of sequences converging at a particular GO term, but penalizes the distance of the sequence to that GO term [ 108].
The nucleotide distances of the sequences ranged from 0 to 19.9%.
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