High-Wavies, a separate island, is nearly equidistant to the other islands, Peppara and Anamalai; however, it is closer to Anamalai in genetic distance, number of shared haplotypes and FST values, thus forming a single population.
While the disparity between zebrafish, or other fish, and mammals is exaggerated by evolutionary distance, our analysis of shared synteny indicates that members of distinct subfamilies in mammals and fish still may bear co-orthology.
Similar results were obtained using other genetic distances (including Nei's chord distance, Cavalli-Sforza & Edwards distance and the proportion of shared alleles; Bowcock et al. 1994; Cavalli-Sforza and Edwards 1967; Nei et al. 1983) and reconstruction algorithms (UPGMA and BioNJ; Gascuel 1997).
The most distinguishing characteristic of a low-barrier H-bond is a similar distance of the shared proton from the donor and the acceptor (see Figure 1, center).
B2N calculates the Jaccard distance for both dimensions of the phylogenetic profiles matrix, which corresponds to the distance between plasmids in term of shared genes, and the distance between occurrence patterns of protein clusters in plasmids.
Genetic distance values were based on the coefficient of shared allele distance, estimated by the ratio between the sum of the proportions of common alleles between two accessions (Ps) for all loci and twice the number of tested loci [ 21, 22].
Fixation indices (FST) [ 89] based on pair-wise distance between individuals (number of shared peaks in AFLP profiles) were calculated in ARLEQUIN v3.01 [ 90] with significance set to P < 0.05 (tested by 50,172 permutations among groups).
Measures of genetic distance, estimated from the proportion of shared alleles, were obtained for the SSR and SNP datasets, respectively.
A dendrogram based on the proportion of shared alleles distance classified the accessions in the mango collection into two genetic subgroups.
The genetic distance between individual isolates was calculated using the binary data with all isolates, including the references, PowerMarker software (Liu and Muse 2005), and the neighbor-joining (NJ) method based on the proportion of shared allele distance.
