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However, it has been shown that a Synechocystis sp. PCC 6803 contains two highly divergent Psb28 proteins displaying identity of only 33% with 48% of amino acid residues showing similar properties (positives) (see Figure 5 for details).
Thus, those entries displaying identity length coordinates over the curve correspond to statistically significant hits.
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A homologous exo cluster was located in a putative megaplasmid contig of PRF 81 with gene products displaying identities between 82% and 98% with those of CIAT 899.
Two single-spore cultures, however, nominally originating from completely different locations, displayed identity at all 18 loci, suggesting with 99.999999% probability that they represent a single clone.
Finally, degenerate sequences were those sequences that displayed identity with consensus sequences of the major characterized TEs (RepBase).
The length over which these regions displayed identity with the internal IGS was assumed to reflect the UTR.
More precisely, the chitin synthase sequences from Atrina rigida and Mytillus galloprovincialis displayed identity percentages of 91% and 84%, respectively, with the homologous P. margaritifera sequence.
The sequence upstream to the D4Z4/Beta satellite region (subsequences 36 and 37 of BAC 709I17; total length of 44.098 kb) displayed identity with both 3p12.3 and 4q35.2.
VRN1 promoter from A genome of T. dicoccum (near-isogenic line BS1E - Black Spring Vrn1 Emmer) displayed identity with Vrn-A1a allele observed previously in T. aestivum near-isogenic line Triple Dirk D (TDD) and contained the insertion of a foldback element.
The N66 sequence from P. maxima and Nacrein sequence from P. fucata (P. maxima N44 homolog sequence) displayed identity percentages of 82% and 69%, respectively, with P. margaritifera homolog sequence.
Intriguingly, the splicing profile of each Hel1-333 tramplifiedamplifrom from inbreds HP301, OH7B, and Tzi8 was distinct and did not display identity to any of the Hel1-333 transcrisoformsofms of B73 (Barbaglia et al. 2012).
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Justyna Jupowicz-Kozak
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