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The correlation coefficient was calculated for all combinations of times t and t', and were displayed as a matrix image.
The best order was examined with the command "lod table," where genetic distances and LOD scores are displayed as a matrix.
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The result of pairwise comparison of the electrostatic potentials of a single subunit of all the ferritin family affiliates is displayed as a colorized matrix in Figure 10A.
Each cluster is displayed as a bit matrix.
The similarity indices are then converted to electrostatic distances which are then displayed as a colour coded matrix called as the heat map (Fig. S2) and as a tree or a cluster dendogram (Fig. S1).
If any sample or track attributes have been loaded, they are displayed as a color-coded matrix in the attribute panel as illustrated in Figure 3.
The metadata might include, for example, clinical, experimental or computational data such as patient identifier, pedigree, phenotype, outcome, cluster membership, etc. Metadata is displayed as a color-coded matrix in the attribute panel.
The result of webPIPSA is displayed as a color-coded distance matrix.
The relatedness of isolates was displayed as a dendrogram by using the matrix of pairwise differences in the allelic profiles of the isolates and the unweighted pair group method with arithmetic averages (UPGMA), using MEGA version 3.1[ 13].
Allelic profiles of isolates were imported into BioNumerics version 4.61, and relatedness of isolates was displayed as a dendrogram by using the matrix of pairwise differences in the allelic profiles and UPGMA clustering.
In the cluster heatmap, the data matrix is displayed as a heatmap, a 2-dimensional array in which the colour of each element corresponds to its value.
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