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Therefore, genome rearrangements, gene losses, and RNA- and DNA-based transposed gene duplications may account for the larger proportions of dispersed duplicates in these species.
In rice, Li, Zhang, et al. (2009) observed that genes duplicated in tandem or maintained in long syntenic blocks after duplication were more correlated in their expression compared with those maintained as dispersed duplicates.
Duplicated genes usually can be classified into tandem, segmental and dispersed duplicates.
The remaining eight families contain dispersed duplicates found in different scaffolds.
Genes within a single genome can be classified as singletons, dispersed duplicates, proximal duplicates, tandem duplicates and segmental/WGD [ 45].
Both tandemly duplicated genes [ 46– 48] and dispersed duplicates [ 48] are more prevalent in regions of the genome with high recombination.
Similar(49)
Another alternative is that tandem duplicate genes supposedly arise from more recent events of gene duplication than dispersed duplicate genes.
We found 398 and 942 dispersed duplicated genes in PAB-4377 and LEM1537 with 360 expansions in common (Fig. 4c, d, Additional file 1: Table S7 and S8).
In addition, 27, 10 and 46 StNACs were also found to be tandem, proximal and dispersed duplicated, respectively (Table 1), which might have also contributed to the expansion of the StNAC family.
The marked intra-species difference in dispersed duplicated genes shows that extensive variation in gene copy number can occur between isolates belonging to the same species and supports the hypothesis that chromosome and gene CNV act as a mechanism of rapid parasite adaptation [ 12, 26].
Unless new evidences emerge from future updates in the sequenced genomes, we hold true that these genes have newly evolved, probably from modifications on previously non-coding ancestral DNA sequences and subsequently disperse duplicated.
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