Sentence examples for disequilibrium data from inspiring English sources

Within this locus, 15 informative SNPs with MAF>0.05 were present, and their HapMap linkage disequilibrium data (D' and r2 values) are given in Figure 1.

More recently, Khil and Camerini-Otero [20] have shown that present-day genetic crossovers are well predicted by a population averaged hotspot map computed from linkage disequilibrium data.

Allele frequency, association and linkage disequilibrium data for all the SNPs were statistically assessed using Haploview software package (version 4.1; http://www.broad.mit.edu/personal/jcbarret/haplo/).edu/personal/jcbarret/haplo/

To address this issue we introduce a systematic data integration method Candidate Genes and SNPs (CANGES) that links SNP and linkage disequilibrium data to pathway- and protein-protein interaction information.

Supplementary Figure 1 and 2 display the linkage disequilibrium data matrix (based on HapMap CEU data) and the genes located witin this 6p21 region (from 312 kb to 321 kb).

To test if this departure from LE was due to the presence of MLG duplicates, these were removed, but the population remains in linkage disequilibrium (data not shown), thus showing that it does not have an epidemic structure (where underlying mating is masked by the short-term clonal expansion of a predominant genotype [10]).

dEffect/Other, alleles; all odds ratios (ORs) are calculated relevant to the effect allele defined as the allele in-phase with rs3825018 G allele according to 1,000 Genomes linkage-disequilibrium data.

If additional files are supplied, additional tracks are created including phenotypic summary information for continuous phenotypes, gene summary information, and linkage disequilibrium (LD) data plotted in Haploview style [ 2] format as D' or r.

Some examples include plug-ins for calculating linkage disequilibrium, dumping data as GFF or FASTA and facilitating the connection between GBrowse and Galaxy (34).

Allele frequency and linkage disequilibrium (LD) data for the four HapMap populations were obtained from HapMap database (http://www.hapmap.org, phase 2).

Linkage disequilibrium (LD) data were obtained from SNAP Proxy, using CEU as the "population panel" and the 1000 Genomes Pilot 1 as "SNP dataset" [ 59].