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Since the Disease Ontology [13] has already mapped terms to various public disease identifiers, we adopted Disease Ontology ID as primary ID.
The resulting file downloaded from the David Database contained human ensembl gene identifiers and OMIM disease identifiers.
The top three false positives gene symbols along with the disease identifiers and disease names for the selected 24 MeSH descriptors are listed in Table 7.
For example, Wiegers et al. (16) have demonstrated potential in ranking documents according to chemical, gene/protein and disease identifiers in text to augment the efficiency of manual curation of the Comparative Toxicogenomics Database.
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The "Phenopedia" file was downloaded from the HuGENet website (October 2013) and we identified 395 unique human genes associated with the disease identifier "Psoriasis(C0033860)".
Diseases can be presented as MESH, OMIM ID, UMLS or free text, but no universal disease identifier has been agreed to present them.
We used the July 2014 build (http://ctdbase.org/down loads/) and selected all terms with an OMIM alternative disease identifier.
To allow for direct comparison with the datasets described earlier in the text, we mapped the miRNAs and diseases to miRbase and Disease Ontology identifiers, respectively.
Although CHDWiki is not directly compatible with the Semantic Web approaches, it was implemented using a standard nomenclature for all terms (for example, AEPC terms for disease, EnsEMBL identifiers for genes), thus allowing straightforward transfer of its content to the new semantic web standards (for example, GEN2PHEN, a resource aimed at unifying genetic variation databases).
As Nantucket's surgeon, medical examiner, school physician, football team doctor, Lyme disease expert, identifier of excavated Indian bones and occasional Dr. Doolittle, Dr. Lepore has pretty much seen it all.
In the RA groups, genes especially associated with the regulation of immunologic processes appear to be suitable as disease-specific identifiers.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com